Mathematical and Statistical Challenges in Bridging Model Development, Parameter Identification and Model Selection in the Biological Sciences

Videos from BIRS Workshop 18w5144

, Newcastle University
- 10:59
Scalable algorithms for Markov process parameter inference
Watch video | Download video: 201811121032-Wilkinson.mp4 (85M)
, Virginia Tech
- 11:28
From parameter and uncertainty estimation to optimal experimental design: challenges in biological dynamical systems inference
Watch video | Download video: 201811121100-Chung.mp4 (90M)
, University of New South Wales
- 12:01
Building models that encode both the known and the unknown
Watch video | Download video: 201811121131-Coster.mp4 (104M)
, University of Nottingham
- 14:34
Challenges in ion channel model calibration, selection and discrepancy
Watch video | Download video: 201811121403-Mirams.mp4 (115M)
, University of Southern California
- 15:17
Hybrid modeling and parameter inference reveals branching constraints for kidney morphogenesis
Watch video | Download video: 201811121436-MacLean.mp4 (158M)
, Queensland University of Technology
- 15:59
A Bayesian sequential learning framework to parametrise a model of melanoma invasion into human skin
Watch video | Download video: 201811121532-Browning.mp4 (87M)
, University of Canterbury
- 16:36
Spatial moment models for collective cell behaviour
Watch video | Download video: 201811121601-Plank.mp4 (138M)
, University of Calgary
- 09:30
Emulation-based methods for parameterizing spatial infectious disease models
Watch video | Download video: 201811130900-Deardon.mp4 (96M)
, Newcastle University
- 10:04
Variational inference for stochastic differential equations
Watch video | Download video: 201811130933-Prangle.mp4 (112M)
, Simon Fraser University
- 10:45
Testing for statistical parameter identifiability
Watch video | Download video: 201811131005-Campbell.mp4 (205M)
, University of British Columbia
- 11:35
Bayesian computational biology
Watch video | Download video: 201811131105-Bouchard-Cote.mp4 (97M)
, University of Oxford
- 14:03
Multifidelity approaches to approximate Bayesian computation
Watch video | Download video: 201811131333-Prescott.mp4 (104M)
, University of Edinburgh
- 14:35
Computationally efficient parameter estimation for gene regulatory networks
Watch video | Download video: 201811131407-Grima.mp4 (97M)
, University of Manchester
- 15:10
Transport map-accelerated adaptive importance sampling for inverse problems of multiscale stochastic chemical networks
Watch video | Download video: 201811131436-Cotter.mp4 (122M)
, University of Warwick
- 16:05
Inference for stochastic oscillators with distributed delays

Watch video | Download video: 201811131533-Finkenstadt.mp4 (109M)
, University of British Colombia
- 16:38
Stochastic vs. deterministic modeling in bio-science
Watch video | Download video: 201811131608-Greenwood.mp4 (116M)
, McMaster University
- 09:30
Bridging between statistics and science: Some philosophical claptrap
Watch video | Download video: 201811140901-Dushoff.mp4 (103M)
, University of Alberta
- 10:01
Study design and parameter estimability for spatial and temporal ecological models using data cloning
Watch video | Download video: 201811140931-Lewis.mp4 (98M)
, University of Michigan
- 10:34
Forward-in-time phylodynamics via sequential Monte Carlo
Watch video | Download video: 201811141002-King.mp4 (107M)
, The Ohio State University
- 11:34
Identifying individual disease dynamics in a stochastic multi-pathogen model from aggregated reports and laboratory data
Watch video | Download video: 201811141104-Chkrebtii.mp4 (110M)
, Dalhousie University
- 09:35
Sequential Monte Carlo approaches for inference in dynamical systems: application to spatio-temporal models of ocean biogeochemistry
Watch video | Download video: 201811150902-Dowd.mp4 (121M)
, University of Auckland
- 10:11
Lessons for biological parameter estimation from large-scale engineering inverse problems
Watch video | Download video: 201811150937-Maclaren.mp4 (135M)
, University of Tasmania
- 11:10
Assessing model adequacy in molecular phylogenetics
Watch video | Download video: 201811151038-Holland.mp4 (126M)
, McGill University
- 11:52
Untangling the hairball: fitness based reduction of biological networks
Watch video | Download video: 201811151111-Francois.mp4 (130M)
, Moffitt Cancer Center
- 14:01
Systemic dynamics and effects from multiple metastases during adaptive therapy in prostate cancer
Watch video | Download video: 201811151331-Gallaher.mp4 (116M)
, University of Bergen
- 14:36
Empirical Bayes methods for prior estimation in systems biology modelling
Watch video | Download video: 201811151403-Roblitz.mp4 (118M)
, University of Oxford
- 15:32
Experimental verification of a coarse-grained model predicts that production is rate-limiting for mRNA localization
Watch video | Download video: 201811151500-Harrison.mp4 (168M)
, Arizona State University
- 16:05
Estimating velocity from time traces of molecular motors
Watch video | Download video: 201811151533-Fricks.mp4 (128M)