Mathematics and Statistics of Genomic Epidemiology (Online)

Videos from CMO Workshop 20w5222

, Fred Hutchinson Cancer Research Center
- 10:21
Genomic tracking of SARS-CoV-2 evolution and spread
Watch video | Download video: 202011091000-Bedford.mp4 (28M)
, University of Western Ontario
- 10:39
How different is the flu you transmit from the flu you received?
Watch video | Download video: 202011091020-Wahl.mp4 (23M)
, Imperial College London
- 11:10
The evolution of multi-strain bacterial populations
Watch video | Download video: 202011091050-Croucher.mp4 (24M)
, BCCDC
- 11:30
High-resolution characterization of global Salmonella subpopulations
Watch video | Download video: 202011091110-Liu.mp4 (22M)
, University of Michigan
- 12:50
Phylodynamics and genealogy-valued Markov processes
Watch video | Download video: 202011091230-King.mp4 (26M)
, Simon Fraser University
- 13:10
Bayesian inference of parameters in transmission models
Watch video | Download video: 202011091250-Wang.mp4 (25M)
,
- 13:34
Mapping the shared evolutionary trajectories of resistance genes and other (possibly!) bad actors
Watch video | Download video: 202011091320-Beiko.mp4 (19M)
, Laboratory for Industrial and Applied Mathematics, York University
- 14:00
COVID-19: implication of multi-waves
Watch video | Download video: 202011091340-Wu.mp4 (23M)
, Centre Nationale de la Recherche Scientifique & Institut Pasteur
- 10:20
Large-scale phylogeography of hCoV-19
Watch video | Download video: 202011101000-Gascuel.mp4 (31M)
, UdeM
- 10:40
Genomic epidemiology of SARS-CoV-2 in Quebec
Watch video | Download video: 202011101020-Murall.mp4 (26M)
, Imperial College London
- 11:10
Estimating the age groups that sustain resurging COVID-19 epidemics in the United States
Watch video | Download video: 202011101050-Monod.mp4 (36M)
, NC State
- 12:50
Decomposing the sources of SARS-CoV-2 fitness variation using phylodynamics
Watch video | Download video: 202011101230-Rasmussen.mp4 (25M)
, Emory University
- 13:10
Phylodynamic inference - with and without phylogenies?
Watch video | Download video: 202011101250-Koelle.mp4 (31M)
, University of California - Irvine
- 13:40
Bayesian modeling and data integration in infectious disease phylodynamics
Watch video | Download video: 202011101320-Minin.mp4 (28M)
, Western University
- 14:00
Optimizing the genetic clustering of viruses for public health surveillance
Watch video | Download video: 202011101340-Poon.mp4 (31M)
, University of Warwick
- 10:20
Additive uncorrelated relaxed clock models
Watch video | Download video: 202011111000-Didelot.mp4 (25M)
, University of Warwick
- 10:40
Hierarchical population genomic structure of bacterial pathogens in EnteroBase
Watch video | Download video: 202011111020-Achtman.mp4 (30M)
, Imperial College London
- 11:10
Estimating population level transmission dynamics from pathogen deep sequence data: a case study around HIV hotspots in sub Saharan-Africa
Watch video | Download video: 202011111050-Ratmann.mp4 (26M)
, University of British Columbia
- 11:30
Distribution continuum methods for phylogenetic inference
Watch video | Download video: 202011111110-Bouchard.mp4 (28M)
, bioMérieux
- 13:10
Improving the interpretability of k-mer-based signatures for antibiotic resistance prediction
Watch video | Download video: 202011111250-Mahe.mp4 (30M)
, EBI/Sanger Institute
- 13:40
Revealing hidden genetic variation in the bacterial accessory genome
Watch video | Download video: 202011111320-Iqbal.mp4 (44M)
, UCLA
- 14:00
mbImpute: an accurate and robust imputation method for microbiome data
Watch video | Download video: 202011111340-Li.mp4 (28M)
, Harvard University
- 10:20
Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae
Watch video | Download video: 202011121000-Ma.mp4 (23M)
, Harvard T.H. Chan School of Public Health
- 10:40
Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae
Watch video | Download video: 202011121020-Mortimer.mp4 (26M)
, UNAM
- 11:10
Population genomics of A. baumannii reveals a licentious and highly mobile resistome
Watch video | Download video: 202011121050-Castillo-Ramirez.mp4 (19M)
, University of Waterloo
- 11:30
Synthetic biology approaches to suppression of antibiotic resistance
Watch video | Download video: 202011121110-Ingalls.mp4 (23M)
, Memorial Sloan-Kettering Cancer Center
- 12:50
Identifying prognostic pairwise relationships among bacterial species in microbiome studies
Watch video | Download video: 202011121230-Ostrovnaya.mp4 (24M)
, Lady Davis Institute
- 13:10
Bayesian community modelling of the microbiome
Watch video | Download video: 202011121250-Greenwood.mp4 (26M)
, Imperial College, London
- 13:40
Interpretable machine learning methods for predicting drug resistance
Watch video | Download video: 202011121320-Chindelevitch.mp4 (24M)
, University of Bath
- 14:00
The adaptation and transmission of Klebsiella species and strains in human, animal and environmental settings
Watch video | Download video: 202011121340-Feil.mp4 (41M)
, University of Calgary
- 10:05
Considerations for estimating Rt in Alberta, Canada
Watch video | Download video: 202011131000-Gordon.mp4 (unknown)
, NCSU
- 10:10
Inference of Multiscale Selection using a Continuous Type Birth Death Model
Watch video | Download video: 202011131005-Hamins-Puertolas.mp4 (unknown)
, NCSU
- 10:15
Using phylodynamics and decision trees to estimate the effects of mutation on viral fitness
Watch video | Download video: 202011131010-Kepler.mp4 (unknown)
, EMBL-EBI & Sanger Institute
- 10:20
Combining sequencing technologies and data mining to study (mega)plasmid families
Watch video | Download video: 202011131015-Cazares.mp4 (unknown)
, SFU
- 10:25
Case fatality imputation using machine learning
Watch video | Download video: 202011131020-Forna.mp4 (unknown)
, UCLA
- 10:30
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data
Watch video | Download video: 202011131025-Song.mp4 (unknown)
, UCLA
- 10:35
Benchmarking computational doublet-detection methods for single-cell RNA sequencing data
Watch video | Download video: 202011131030-Xi.mp4 (unknown)
, Imperial
- 10:40
In-browser genome sketching for secure real-time genomic epidemiology
Watch video | Download video: 202011131035-Anderson.mp4 (unknown)
, U Montreal
- 10:45
Do machine learning predictors of microbial phenotype from genotype identify causal variants?
Watch video | Download video: 202011131040-Mahmoudisaber.mp4 (unknown)
, Imperial College London
- 10:50
ggCaller: a gene caller for bacterial pangenome graphs
Watch video | Download video: 202011131045-Horsfield.mp4 (unknown)
, Simon Fraser University
- 10:55
Deep clustering of bacterial tree images
Watch video | Download video: 202011131050-Hayati.mp4 (unknown)
, Harvard School of Public Health
- 11:00
Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host
Watch video | Download video: 202011131055-Qiu.mp4 (unknown)