The Crossroads of Topology, Combinatorics and Biosciences
Videos from BIRS Workshop
Simon Vecchioni, New York University
Monday Mar 18, 2024 09:10 - 09:57
Topology, Chirality and Symmetry from Primary to Quaternary Structure in DNA Lattices
Joanna Ellis-Monaghan, University of Amsterdam
Monday Mar 18, 2024 10:32 - 10:56
Knotty problems in DNA origami scaffold routing
Koya Shimokawa, Ochanomizu University
Monday Mar 18, 2024 11:00 - 11:25
Application of band surgery on knots and links
Lynn Zechiedrich, Baylor College of Medicine
Monday Mar 18, 2024 13:31 - 14:14
“Cracking” the secondary codes; how supercoiling, looping, and counterions control access to the primary code of DNA
Penn Rainford, University of York
Monday Mar 18, 2024 14:30 - 14:59
TORC: Using Superhelicity as a control mechanism in Plasmids
Eleni Panagiotou, Arizona State University
Monday Mar 18, 2024 15:35 - 16:00
Topology and geometry of collections of biopolymers
Christine Heitsch, Georgia Institute of Technology
Monday Mar 18, 2024 16:02 - 16:34
On a barrier height problem for RNA branching
Ethan Holleman, University of California, Davis
Tuesday Mar 19, 2024 10:30 - 10:52
High-resolution single-molecule investigations reveal new insights into the R-loop energetics landscapes
Mario Nicodemi, Università di Napoli "Federico II"
Wednesday Mar 20, 2024 09:00 - 09:53
Phase transitions in the nucleus of cells shape chromosome folding and function
Lila Kari, University of Waterloo
Wednesday Mar 20, 2024 10:32 - 11:01
Extreme Environments Leave Mathematical Imprints in Genomes
Javier Arsuaga, University of California,Davis
Thursday Mar 21, 2024 09:00 - 09:46
The bacteriophage as a model system to study double stranded DNA under spatial confinement
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Thursday Mar 21, 2024 10:30 - 11:01
Topological Bonded Knots and Knotoids
Puttipong Pongtanapaisan, Arizona State University
Thursday Mar 21, 2024 11:01 - 11:23
Modeling DNA in nanochannels as links in lattice tubes
Allison Moore, Virginia Commonwealth University
Thursday Mar 21, 2024 13:30 - 13:57
Unknotting operations and invariants of trivalent spatial graphs
Andrew Rechnitzer, Ubc
Thursday Mar 21, 2024 14:00 - 14:30
One more attempt at topology preserving pivots
Matthew Schmirler, University of Saskatchewan
Thursday Mar 21, 2024 14:32 - 15:00
Optimizing a Lattice Polygon Polymer Model Using Stochastic Approximation
Max Gamill, University of Sheffield
Thursday Mar 21, 2024 15:34 - 15:58
Tacking Topology with TopoStats
Pengyu Liu, University of California, Davis
Thursday Mar 21, 2024 16:01 - 16:25
Understanding R-loop formation with tree polynomial representations of RNA secondary structures
Abby Pekoske Fulton, Wentworth Institute of Technology
Friday Mar 22, 2024 09:01 - 09:30
Dynamics of DNA trefoil knots with intrinsic excess twist
Cody Geary, Aarhus University
Friday Mar 22, 2024 09:35 - 09:57
ROAD to Unknotted RNA: Designing Co-Transcriptional Folds
