Particle-Based Stochastic Reaction-Diffusion Models in Biology
Videos from BIRS Workshop
Attila Becskei, University of Basel
Monday Nov 10, 2014 09:09 - 09:42
Diffusion and noise in bistable systems
Jun Allard, University of California, Irvine
Monday Nov 10, 2014 09:46 - 10:24
Mechanics of diffusing surface molecules modulates T-cell receptor sensitivity
Avrama Kim Blackwell, George Mason University - Krasnow Institute for Advanced Study
Monday Nov 10, 2014 11:21 - 12:03
Dynamical spatial models of signaling pathways underlying synaptic plasticity
Stefan Engblom, Uppsala University
Monday Nov 10, 2014 14:17 - 14:59
Mesoscopic Stochastic Modeling: Diffusion Operators, Multiphysics Couplings, and Convergence
Yang Cao, Virginia Tech
Monday Nov 10, 2014 14:59 - 15:41
Multigrid Discretization Strategy on Discrete Stochastic Simulation of Reaction-Diffusion Systems
Kevin Sanft, University of Minnesota
Monday Nov 10, 2014 16:37 - 17:19
Scaling properties of exact simulation algorithms for spatially discretized stochastic reaction-diffusion processes
Carlos Lopez, Vanderbilt
Tuesday Nov 11, 2014 09:02 - 09:37
Use of biological model-programs in PySB to explore and calibrate cell-death decisions
Andreas Hellander, Uppsala Unversity
Tuesday Nov 11, 2014 09:38 - 10:20
Accuracy of the Michaelis-Menten approximation when analyzing effects of molecular noise
Jay Newby, Ohio State University - Mathematical Biosciences Institute
Tuesday Nov 11, 2014 10:47 - 11:22
Asymptotic and numerical methods for metastable events in stochastic gene networks
Daniel Coombs, University of British Columbia
Tuesday Nov 11, 2014 11:22 - 11:57
Random violence: A stochastic approach to cell cytotoxicity
Dan Gillespie, Dan T. Gillespie Consulting
Tuesday Nov 11, 2014 13:33 - 14:15
The Small-Voxel Tracking Algorithm
Stefan Hellander, University of California, Santa Barbara
Tuesday Nov 11, 2014 14:24 - 14:55
Reaction rates for mesoscopic reaction-diffusion kinetics
Mauricio Del Razo Sarmina, University of Washington
Tuesday Nov 11, 2014 15:23 - 15:57
A discrete stochastic model for reversible diffusion-controlled reactions
Anastasios Matzavinos, Brown University
Tuesday Nov 11, 2014 16:00 - 16:42
Dissipative particle dynamics simulations of polymer networks
Vahid Shahrezaei, Imperial College London
Wednesday Nov 12, 2014 09:04 - 09:43
When we need particle-based reaction-diffusion simulations and when we don’t
Steve Andrews, Fred Hutchinson Cancer Research Center
Wednesday Nov 12, 2014 09:44 - 10:22
The Smoldyn simulator: overview, applications, and hybrid simulation
Thomas Sokolowski, IST Austria
Wednesday Nov 12, 2014 10:43 - 11:24
eGFRD in all dimensions
Kazunari Kaizu, RIKEN Quantitative Biology Center
Wednesday Nov 12, 2014 11:24 - 12:00
E-Cell System version 4.0: an integrated platform for single-particle-level
Leonard Harris, Vanderbilt University
Wednesday Nov 12, 2014 20:04 - 20:28
Clonal Heterogeneity vs. Stochastic Cell Fate Decisions in Cancer Response to Targeted Drugs
Ava Mauro, Boston University
Wednesday Nov 12, 2014 20:29 - 20:54
A dynamic lattice version of the First-Passage Kinetic Monte Carlo method
Peter Thomas, Case Western Reserve University
Wednesday Nov 12, 2014 20:57 - 21:29
Stochastic Shielding: a Novel Approach to Simplifying Random Processes on Graphs
Frank Noe, Freie Universitaet Berlin
Thursday Nov 13, 2014 09:04 - 09:45
Interacting-Particle Reaction-Diffusion (iPRD) Dynamics
Thorsten Prüstel, National Institutes of Health - Laboratory of Systems Biology
Thursday Nov 13, 2014 09:46 - 10:28
Novel analytical results for diffusion-influenced receptor-ligand reactions in two dimensions
Margaret Johnson, Johns Hopkins University
Thursday Nov 13, 2014 10:52 - 11:27
Free-Propagator Reweighting Integrator for Single-Particle Reaction Diffusion Dynamics in Solution and on the Membrane
Samuel Isaacson, Boston University
Thursday Nov 13, 2014 11:27 - 12:05
Lattice Approximation of Spatially-Continuous Particle-Based Stochastic Reaction-Diffusion Models
Ruth Baker, University of Oxford
Thursday Nov 13, 2014 13:36 - 14:11
Adaptive multi-level Monte Carlo methods
Radek Erban, University of Oxford
Thursday Nov 13, 2014 14:12 - 14:37
From Molecular Dynamics to Particle-based Stochastic Reaction-Diffusion Models
Hye-Won Kang, University of Maryland, Baltimore County
Thursday Nov 13, 2014 15:23 - 15:51
Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with SPDEs
Christian Yates, University of Oxford - Centre for Mathematical Biology
Thursday Nov 13, 2014 15:52 - 16:21
A PDE/compartment-based hybrid method for simulating stochastic reaction-diffusion systems
