Deep Learning for Genetics, Genomics and Metagenomics: Latest developments and New Directions

Videos from BIRS Workshop

, Stanford University
- 08:40
Deep learning oracles for genomic discovery
Watch video | Download video: 202206060800-Kundaje.mp4 (60M)
, UT Southwestern Medical Center
- 09:45
Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale
Watch video | Download video: 202206060920-Zhou.mp4 (31M)
, Technical University of Munich
- 10:10
A genetic algorithm with deep learning based guided mutations improves de novo peptide sequencing
Watch video | Download video: 202206060945-Gagneur.mp4 (25M)
, McGill University
- 10:35
Learning from Evolution
Watch video | Download video: 202206061010-Blanchette.mp4 (40M)
, Université de Montréal
- 14:45
Deep learning on genetic data with Diet Network and its application to a complex phenotype
Watch video | Download video: 202206061420-Rochefort-Boulanger.mp4 (28M)
, Stanford University
- 15:10
Geometric Deep Learning for Multiplex Spatial Biology
Watch video | Download video: 202206061430-Zou.mp4 (62M)
, McGill University
- 15:10
RAPPPID: Deep, Regularised Protein-Protein Interaction Prediction that Generalises to Unseen Proteins
Watch video | Download video: 202206061445-Szymborski.mp4 (22M)
, HEC Montreal
- 15:35
Geometric Deep Learning for Drug Discovery
Watch video | Download video: 202206061510-Dey.mp4 (48M)
, McGill University
- 17:25
Data-driven approaches to identify the origins of pediatric brain tumors
Watch video | Download video: 202206061700-Jessa.mp4 (28M)
, McGill
- 17:50
Case-Base Neural Networks: survival analysis with time-varying, higher-order interactions
Watch video | Download video: 202206061720-Islam.mp4 (26M)
, Fred Hutchinson Cancer Center
- 08:25
Biologically-informed neural networks for scRNA-seq data
Watch video | Download video: 202206070800-Sun.mp4 (39M)
, The University of Chicago
- 08:50
Model-Based Trajectory Inference for Single-Cell RNA Sequencing Using Deep Learning with a Mixture Prior
Watch video | Download video: 202206070825-Wang.mp4 (39M)
, University of Pennsylvania
- 09:15
Deciphering tissue microenvironment by integrative analysis of spatial transcriptomics with histology images and single cells
Watch video | Download video: 202206070850-Li.mp4 (43M)
, Brown University
- 10:10
Towards spatial and temporal modeling of gene regulation using deep learning
Watch video | Download video: 202206070930-Singh.mp4 (40M)
, Yale University
- 11:00
Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencoders
Watch video | Download video: 202206071035-Zhao.mp4 (38M)
, McGill University
- 13:40
An all-in-one statistical framework that simulates realistic single-cell omics data and infers cell heterogeneity structure
Watch video | Download video: 202206071300-Li.mp4 (50M)
, Johns Hopkins Bloomberg School of Public Health
- 14:05
Cross-modality prediction and imputation of functional genome on single cells
Watch video | Download video: 202206071340-Ji.mp4 (36M)
, University of Washington
- 14:45
Deep learning of immune cell differentiation
Watch video | Download video: 202206071420-Mostafavi.mp4 (30M)
, University of Pennsylvania
- 15:10
Deep neural networks for denoising and batch correction in single cell genomics
Watch video | Download video: 202206071445-Zhang.mp4 (35M)
, Tsinghua
- 15:35
Deep learning for cell type identification based on single-cell chromatin accessibility data
Watch video | Download video: 202206071510-Jiang.mp4 (92M)
, UCLA
- 08:50
Interpretable deep learning for genomic discovery
Watch video | Download video: 202206080825-Sankararaman.mp4 (31M)
, University Health Network/University of Toronto
- 09:30
Reproducibility standards for machine learning in the life sciences
Watch video | Download video: 202206080850-Hoffman.mp4 (60M)
, University of Toronto
- 10:10
Leveraging electronic health records for genetic research
Watch video | Download video: 202206080945-Gronsbell.mp4 (24M)
, McGill University
- 10:35
Neural topic modeling of electronic health records
Watch video | Download video: 202206081010-Li.mp4 (47M)
, Harvard T.H. Chan School of Public Health
- 08:25
Evaluating the informativeness of deep learning annotations for human complex diseases
Watch video | Download video: 202206090800-Dey.mp4 (30M)
, ETH Zurich
- 09:30
Deciphering shared intratumor transcriptional heterogeneity of human tumors
Watch video | Download video: 202206090905-Boeva.mp4 (29M)
, McGill University
- 10:10
Deep Learning in Cancer Precision Medicine
Watch video | Download video: 202206090930-Emad.mp4 (39M)
, University of Manitoba
- 10:35
Deep learning-empowered breast cancer radiogenomics for precision medicine
Watch video | Download video: 202206091010-Hu.mp4 (41M)
, University of Toronto
- 12:55
Unusual suspects: Recent advances and new challenges in X chromosome-inclusive analyses
Watch video | Download video: 202206091230-Sun.mp4 (25M)
, Harvard University
- 13:20
Estimation of the number of ancestry PCs using bulk eigenvalue matching analysis
Watch video | Download video: 202206091255-Lin.mp4 (25M)
, University of Minnesota
- 13:45
DeLIVR: A Deep Learning Approach to Testing for Non-linear Causal Effects in Transcriptome-Wide Association Studies
Watch video | Download video: 202206091320-Pan.mp4 (29M)
, University of British Columbia
- 14:10
Scaling up Mendelian randomization for high-dimensional -omics data
Watch video | Download video: 202206091345-Cohen-Freue.mp4 (27M)
, Stanford University
- 14:55
Searching for Robust Associations with a Multi-Environment Knockoff Filter
Watch video | Download video: 202206091430-Li.mp4 (27M)
, University of Pittsburgh
- 15:20
Identifying putative causal loci in whole-genome sequencing studies via knockoff Statistics
Watch video | Download video: 202206091455-Liu.mp4 (27M)
, USC
- 15:45
DeepLINK: Deep learning inference using knockoffs with applications to genomics
Watch video | Download video: 202206091520-Sun.mp4 (36M)