Entanglement in biology; how nature controls the topology of proteins and DNA
Videos from BIRS Workshop
Steven Plotkin, University of British Columbia
Monday Nov 18, 2013 09:41 - 10:12
From Euclidean distance, to polymer uncrossing and knotting, to protein folding rate prediction
Sophie Jackson, University of Cambridge
Monday Nov 18, 2013 10:17 - 10:51
Experimental studies on the folding pathways of knotted proteins
Jose Onuchic, Rice University
Monday Nov 18, 2013 11:15 - 11:43
Knotting proteins in implicit solvent
Ellinor Haglund, UCSD, CTBP (The Center for Theoretical Biological Physics)
Monday Nov 18, 2013 11:50 - 12:21
Novel knotted structure
Jason Cantarella, University of Georgia
Monday Nov 18, 2013 14:02 - 14:32
New algorithms for sampling closed and/or confined equilateral polygons
Claus Ernst, Western Kentucky University
Monday Nov 18, 2013 14:34 - 15:06
The effect of confinement on knotting and geometry of random polygons
Koya Shimokawa, Saitama University
Monday Nov 18, 2013 15:36 - 16:06
Lattice knots and links in tubes
Eleni Panagiotou, National Technical University of Athens
Monday Nov 18, 2013 16:07 - 16:31
Entanglement in systems of curves with Periodic Boundary Conditions
Stuart Whittington, University of Toronto
Monday Nov 18, 2013 16:32 - 17:03
Entanglements in self-avoiding walks: Old wine in new bottles
Piotr Szymczak, University of Warsaw
Tuesday Nov 19, 2013 09:37 - 10:07
Translocating knotted peptides
Hongbin Li, University of British Columbia
Tuesday Nov 19, 2013 10:08 - 10:50
Mechanically Tightening a Protein Slipknot into a Trefoil Knot
Javier Arsuaga, University of California, Davis
Tuesday Nov 19, 2013 14:08 - 14:35
Modelling the kinetoplast DNA network
Tetsuo Deguchi, Ochanomizu University
Tuesday Nov 19, 2013 14:35 - 15:07
Random knotting probability of DNA knots and scaling behavior
Esaias Janse van Rensburg, York University
Tuesday Nov 19, 2013 15:34 - 15:59
Modelling the Entropic Pressure near a Ring Polymer
Maridian José Kadomatsu Hermosa, Facultad Politécnica
Tuesday Nov 19, 2013 16:12 - 16:35
Maxwell-Stefan electrophoresis simulation of equal mass type A catenanes and supercoiled dimers
Giovanni Dietler, EPFL
Tuesday Nov 19, 2013 16:37 - 17:08
Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots
Mario Nicodemi, Università di Napoli "Federico II"
Wednesday Nov 20, 2013 09:07 - 09:37
Models of chromatin spatial organisation in the cell nucleus
Andrzej Stasiak, University of Lausanne
Wednesday Nov 20, 2013 09:38 - 10:09
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes
Jorge Schvartzman, Centro de Investigaciones Biologicas
Thursday Nov 21, 2013 09:04 - 09:46
DNA dynamics during replication: the benefit of entanglement
Mariel Vazquez, University of California Davis
Thursday Nov 21, 2013 10:06 - 10:48
DNA unlinking by Xer recombination
Sarah Harris, University of Leeds
Thursday Nov 21, 2013 11:37 - 12:19
Sequence Dependent Denaturation in Small DNA Circles: A Multiscale Approach
Ken Millett, University of California, Santa Barbara
Thursday Nov 21, 2013 14:08 - 14:35
Resolving Knotting Complexity in Proteins and Tight Topological Knots
Chris Soteros, University of Saskatchewan
Thursday Nov 21, 2013 14:36 - 15:07
Entanglement complexity of compressed and stretched polygons in lattice tubes
Michael Szafron, University of Saskatchewan
Thursday Nov 21, 2013 15:34 - 15:59
Asymptotics of the length of an essential arc in a simple-cubic-lattice model for strand-passage
De Witte Sumners, Florida State University
Thursday Nov 21, 2013 16:35 - 17:02
Reconnection In Biology and Physics
Isabel Darcy, University of Iowa
Friday Nov 22, 2013 10:38 - 11:24
Topology and structural self-organization in folded proteins
