Entanglement in biology; how nature controls the topology of proteins and DNA

Videos from BIRS Workshop 13w5133

, University of British Columbia
- 10:12
From Euclidean distance, to polymer uncrossing and knotting, to protein folding rate prediction
Watch video | Download video: 201311180941-Plotkin.mp4 (65M)
, University of Cambridge
- 10:51
Experimental studies on the folding pathways of knotted proteins
Watch video | Download video: 201311181017-Jackson.mp4 (81M)
, Rice University
- 11:43
Knotting proteins in implicit solvent
Watch video | Download video: 201311181115-Onuchic.mp4 (63M)
, UCSD, CTBP (The Center for Theoretical Biological Physics)
- 12:21
Novel knotted structure
Watch video | Download video: 201311181150-Haglund.mp4 (76M)
, University of Georgia
- 14:32
New algorithms for sampling closed and/or confined equilateral polygons
Watch video | Download video: 201311181402-Cantarella.mp4 (65M)
, Western Kentucky University
- 15:06
The effect of confinement on knotting and geometry of random polygons
Watch video | Download video: 201311181434-Ernst.mp4 (64M)
, Saitama University
- 16:06
Lattice knots and links in tubes
Watch video | Download video: 201311181536-Shimokawa.mp4 (86M)
, National Technical University of Athens
- 16:31
Entanglement in systems of curves with Periodic Boundary Conditions
Watch video | Download video: 201311181607-Panagiotou.mp4 (47M)
, University of Toronto
- 17:03
Entanglements in self-avoiding walks: Old wine in new bottles
Watch video | Download video: 201311181632-Whittington.mp4 (59M)
, University of Warsaw
- 10:07
Translocating knotted peptides
Watch video | Download video: 201311190937-Szymczak.mp4 (64M)
, University of British Columbia
- 10:50
Mechanically Tightening a Protein Slipknot into a Trefoil Knot
Watch video | Download video: 201311191008-Li.mp4 (97M)
, University of California at Davis
- 14:35
Modelling the kinetoplast DNA network
Watch video | Download video: 201311191408-Arsuaga.mp4 (55M)
, Ochanomizu University
- 15:07
Random knotting probability of DNA knots and scaling behavior
Watch video | Download video: 201311191435-Deguchi.mp4 (73M)
, York University
- 15:59
Modelling the Entropic Pressure near a Ring Polymer
Watch video | Download video: 201311191534-JansevanRensburg.mp4 (53M)
, Facultad Politécnica
- 16:35
Maxwell-Stefan electrophoresis simulation of equal mass type A catenanes and supercoiled dimers
Watch video | Download video: 201311191612-KadomatsuHermosa.mp4 (42M)
, EPFL
- 17:08
Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots
Watch video | Download video: 201311191637-Dietler.mp4 (71M)
, Universita' di Napoli
- 09:37
Models of chromatin spatial organisation in the cell nucleus
Watch video | Download video: 201311200907-Nicodemi.mp4 (65M)
, University of Lausanne
- 10:09
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes
Watch video | Download video: 201311200938-Stasiak.mp4 (60M)
, Centro de Investigaciones Biologicas
- 09:46
DNA dynamics during replication: the benefit of entanglement
Watch video | Download video: 201311210904-Schvartzman.mp4 (92M)
, University of California Davis
- 10:48
DNA unlinking by Xer recombination
Watch video | Download video: 201311211006-Vazquez.mp4 (101M)
, University of Leeds
- 12:19
Sequence Dependent Denaturation in Small DNA Circles: A Multiscale Approach
Watch video | Download video: 201311211137-Harris.mp4 (106M)
, University of California, Santa Barbara
- 14:35
Resolving Knotting Complexity in Proteins and Tight Topological Knots
Watch video | Download video: 201311211408-Millett.mp4 (60M)
, University of Saskatchewan
- 15:07
Entanglement complexity of compressed and stretched polygons in lattice tubes
Watch video | Download video: 201311211436-Soteros.mp4 (56M)
, University of Saskatchewan
- 15:59
Asymptotics of the length of an essential arc in a simple-cubic-lattice model for strand-passage
Watch video | Download video: 201311211534-Szafron.mp4 (58M)
, Florida State University
- 17:02
Reconnection In Biology and Physics
Watch video | Download video: 201311211635-Sumners.mp4 (81M)
, University of Iowa
- 11:24
Topology and structural self-organization in folded proteins
Watch video | Download video: 201311221038-Darcy.mp4 (121M)