Statistical and Computational Challenges in High-Throughput Genomics with Application to Precision Medicine

Videos from BIRS Workshop 18w5202

, UNAM
- 09:29
Afromexico genomics project: The genetic ancestry and health of the Afrodescendant population of Mexico.
Watch video | Download video: 201811050903-Avila.mp4 (105M)
, Johns Hopkins Bloomberg School of Public Health
- 10:34
Inferring rare disease risk variants based on exact probabilities of sharing among multiple affected relatives.
Watch video | Download video: 201811051010-Ruczinski.mp4 (99M)
, MD Anderson Cancer Center
- 11:31
Genomic analysis tools for familial and case-control sequencing association studies.
Watch video | Download video: 201811051105-Huff.mp4 (76M)
, Universidad Nacional Autonoma de Mexico
- 12:02
Characterizing the effect of genetic variants within promoters with distal enhancer functions.
Watch video | Download video: 201811051134-MedinaRivera.mp4 (87M)
, UCSF
- 12:36
A principle curve approach to three-dimensional chromatin configuration reconstruction.
Watch video | Download video: 201811051205-Segal.mp4 (117M)
, UBC
- 15:53
Machine learning approaches to classify patients progressing to sepsis.
Watch video | Download video: 201811051539-Baghela.mp4 (49M)
, State University Campinas
- 16:35
Brazilian initiative on precision medicine: statistical perspectives.
Watch video | Download video: 201811051603-Carvalho.mp4 (138M)
, Memorial Sloan Kettering Cancer Center
- 17:34
Copy number analysis of circulating cell-free DNA.
Watch video | Download video: 201811051704-Seshan.mp4 (115M)
, Johns Hopkins University
- 09:23
Novel and concordant eQTLs from analysis of iPSC-derived megakaryocytes and platelets in the GeneticStudies of Atherosclerosis Risk (GeneSTAR) project.
Watch video | Download video: 201811060900-Kammers.mp4 (59M)
, Universidad Nacional Autonoma de Mexico
- 09:51
PulmonDB: a gene expression lung diseases database.
Watch video | Download video: 201811060932-Altamirano.mp4 (58M)
, Icahn School of Medicine at Mount Sinai
- 10:29
A new method to study the change of miRNAmRNA interactions due to environmental exposures.
Watch video | Download video: 201811061000-Wang.mp4 (81M)
, University of Rochester
- 11:28
Combining immune cell repertoire sequencing and functional expression with applications to autoimmune disease.
Watch video | Download video: 201811061103-McDavid.mp4 (89M)
, Johns Hopkins University
- 12:03
Co-expression patterns define epigenetic regulators associated with neurological dysfunction.
Watch video | Download video: 201811061135-Hansen.mp4 (93M)
, Instituto de Medicina Molecular João Lobo Antunes
- 12:36
Biologist-intelligible alternative splicing analysis of RNA-seq data.
Watch video | Download video: 201811061208-Barbosa-Morais.mp4 (90M)
, MD Anderson Cancer Center
- 15:31
Genomic profiling of normal, premalignant and heterogeneous tissues in cancer patients.
Watch video | Download video: 201811061503-Scheet.mp4 (95M)
, Icahn School of Medicine at Mount Sinai
- 16:02
Proteogenomic analysis of carboplatin response in ovarian cancer cell lines and PDX models.
Watch video | Download video: 201811061535-Chowdhury.mp4 (99M)
, UC Berkeley
- 16:31
Statistical methods and software for the study of stem cell differentiation using single-cell transcriptome sequencing.
Watch video | Download video: 201811061607-Street.mp4 (86M)
, Memorial Sloan Kettering Cancer Center
- 17:32
Single cell whole genome sequencing for population genetic inference of cancer dynamics.
Watch video | Download video: 201811061705-Shah.mp4 (77M)
, The Walter and Eliza Hall Institute of Medical Research
- 18:06
Design and analysis of a single cell RNA-seq benchmarking dataset to compare protocols and methods.
Watch video | Download video: 201811061741-Ritchie.mp4 (89M)
, Dana-Farber Cancer Institute
- 09:31
Reproducible and replicable comparisons of methods controlling false discoveries in computational biology.
Watch video | Download video: 201811070903-Kimes.mp4 (88M)
, Genentech Inc.
- 10:38
Evaluating the comparability of clinical trials and real world omics data.
Watch video | Download video: 201811071010-Lyalina.mp4 (86M)
, UCLA
- 09:27
Bayesian sparse regression and variable selection for large data with weak signals.
Watch video | Download video: 201811080903-Nishimura.mp4 (75M)
, Johns Hopkins Bloomberg School of Public Health
- 09:38
Detection of de novo copy number deletions from targeted sequencing of trios
Watch video | Download video: 201811080906-Ruczinski.mp4 (123M)
, UNAM
- 10:00
Mutational dynamics in the mouse mitochondrial genome.
Watch video | Download video: 201811080932-HernandezRosales.mp4 (101M)
, State University Campinas
- 10:10
TBA - The Brazilian Approach
Watch video | Download video: 201811080944-Carvalho.mp4 (85M)
, University of Sydney
- 10:47
Exploring single cell data
Watch video | Download video: 201811081014-Yang.mp4 (126M)
, University of North Carolina
- 11:33
Integrative genomic analyses of TCGA pan-cancer data.
Watch video | Download video: 201811081103-Hoadley.mp4 (114M)
, University of Sydney
- 12:00
Multi-omics integration for identifying prognostic biomarkers in complex disease.
Watch video | Download video: 201811081134-Yang.mp4 (102M)
, The University of Sydney
- 12:33
Feature selection using differential correlation across ranked samples.
Watch video | Download video: 201811081209-Patrick.mp4 (93M)
, Johns Hopkins University
- 15:28
Integrated genomic analyses of ovarian cancer cell lines to predict drug sensitivity.
Watch video | Download video: 201811081502-Scharpf.mp4 (91M)
, University of British Columbia
- 15:58
Combining heterogeneous genomics data to understand complex human traits.
Watch video | Download video: 201811081534-Mostavafi.mp4 (95M)
, University of Southern California
- 16:53
Statistical approach for investigating change in mutational process during cancer growth and development.
Watch video | Download video: 201811081631-Siegmund.mp4 (73M)
, New York University & Simons Foundation
- 17:33
Multi-task regulatory network inference applied to multi-study, multi-species and single cell genomic experimental designs.
Watch video | Download video: 201811081659-Bonneau.mp4 (116M)