Mathematics and Statistics of Genomic Epidemiology

Videos from CMO Workshop

, University of British Columbia
- 10:37
SARS-CoV-2, an evolving pandemic
Watch video | Download video: 202211070930-Otto.mp4 (80M)
, Emory University
- 11:29
Crhonic infections likely drive SARS-CoV-2 adaptation
Watch video | Download video: 202211071100-Weissman.mp4 (34M)
, University of Oxford
- 12:01
Comparing the evolutionary dynamics of predominant SARS-Cov-2 virus lineages co-circulating in Mexico
Watch video | Download video: 202211071130-Escalera-Zamudio.mp4 (42M)
, NC State
- 14:32
Designing optimal sampling strategies for pathogen genomic surveillance using reinforcement
Watch video | Download video: 202211071400-Rasmussen.mp4 (40M)
, University of Montreal/McGill University
- 15:32
Genome-wide association of convergent mutations with SARS-CoV-2 animal host preference
Watch video | Download video: 202211071500-Shapiro.mp4 (40M)
, Emory University
- 16:10
Epidemiological inference virus lineages using segregating sites
Watch video | Download video: 202211071530-Park.mp4 (53M)
, University of Pennsylvania
- 09:58
Deep learning to predict the biosynthetic gene clusters in bacterial genomes
Watch video | Download video: 202211080930-Li.mp4 (38M)
, University of California Los Angeles
- 10:26
PCA outperforms popular hidden variable inference methods for QTL mapping
Watch video | Download video: 202211081000-Li.mp4 (31M)
, University of Wisconsin Madison
- 11:29
Multi-trait analysis of rare-variant association summary statistics using MTAR
Watch video | Download video: 202211081100-Tang.mp4 (32M)
, University of Michigan
- 11:58
Likelihood-based Mendelian randomization analysis with automated instrument selection and horizontal pleiotropic modeling
Watch video | Download video: 202211081130-Zhou.mp4 (33M)
, University of Warwick
- 14:00
Detecting imported cases within a geographically limited genomic sample of an infectious disease
Watch video | Download video: 202211081330-Didelot.mp4 (49M)
, Lady Davis Institute
- 14:33
Two kinds of over-dispersion affect regional DNA methylation patterns
Watch video | Download video: 202211081400-Greenwood.mp4 (39M)
, Harvard School of Public Health
- 15:29
Beyond consensus sequence - a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model
Watch video | Download video: 202211081500-Senghore.mp4 (36M)
, Bill & Melinda Gates Foundation
- 10:34
Are HIV genetic clusters enriched with transmitters?
Watch video | Download video: 202211091000-Herbeck.mp4 (44M)
, Centre National de la Recherche Scientifique & Muséum National d'Histoire Naturelle
- 11:30
Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks
Watch video | Download video: 202211091100-Gascuel.mp4 (32M)
, Simon Fraser University
- 11:59
Assumptions and Identifiability of Phylodynamic Inference
Watch video | Download video: 202211091130-MacPherson.mp4 (35M)
, CFIA
- 09:55
Investigating the limits of detection of AMR in agri-food metagenomic samples
Watch video | Download video: 202211100930-Cooper.mp4 (27M)
, Imperial College, London
- 10:37
Compiling all publicly available genotype-phenotype data on AMR
Watch video | Download video: 202211101000-Chindelevitch.mp4 (57M)
, EMBL-EBI
- 11:32
Bigger is better? Solving problems while working with hundreds of thousands of bacterial genomes
Watch video | Download video: 202211101100-Lees.mp4 (45M)
, SFU
- 12:08
Accurate and interpretable prediction of drug resistance in M. tuberculosis using deep learning
Watch video | Download video: 202211101130-Libbrecht.mp4 (51M)
, Dalhousie
- 14:00
Different quality thresholds impact the interpretation of measurements of mock microbial communities
Watch video | Download video: 202211101330-Haider.mp4 (34M)
, Columbia University
- 14:26
Probabilistic Models for Microbiome Dynamics
Watch video | Download video: 202211101400-Peer.mp4 (31M)
, Emory
- 10:00
Detecting patterns of accessory genome coevolution in bacterial species using data from thousands of bacterial genomes
Watch video | Download video: 202211110945-Mehta.mp4 (21M)
, Western University
- 10:18
Revisiting the recombinant history of HIV-1 group M with dynamic network community detection
Watch video | Download video: 202211111000-Olabode.mp4 (22M)
, Imperial College
- 10:31
Inferring bacterial strains in metagenomic data
Watch video | Download video: 202211111015-Unruh.mp4 (17M)